rs3666647 SNP Detail

Summary

• ID
  rs3666647
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121127215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTC CCAGGATAAG GAGCGATGTA
  R
  TGGACTAGCT CCCCAGGAGT GGGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5042596	WI_WGS_2_122263199	WI	MOUSE	f	SNP			G	A
ss45271634	mCV23082177	ABI	CRAMUS_MOUSE	f	SNP	G	G		A	G
ss147383159	ENSMUSSNP4519931	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G			G
ss320482569	CHEV_2_121122470	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3666647					SNP	G	G	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121127215 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D2Dcr65	DNA Segment, Chr 2, Derry C. Roopenian 65			882 bp proximal
D2Mit445	DNA Segment, Chr 2, Massachusetts Institute of Technology 445			879 bp proximal
Gm14978	predicted gene 14978			726 bp upstream
Map1a	microtubule-associated protein 1 A			Intron
				Noncoding-Transcript-Variant
Rr373768	regulatory region 373768			1436 bp downstream
Rr563799	regulatory region 563799			1270 bp distal
Rr563800	regulatory region 563800			737 bp distal
Rr563801	regulatory region 563801			236 bp distal
Rr563802	regulatory region 563802			772 bp proximal
Tssr19740	transcription start site region 19740			1248 bp downstream
Tssr19741	transcription start site region 19741			1858 bp upstream