rs36666673 SNP Detail

Summary

• ID
  rs36666673
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70701831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATGAGAG ACTCTGTAGG
  AACGAGTCCT TGACAGACAG CTCAAGGGGT TTTTTTCCTT TGTCTCATTT CTACATGAAA
  GTAAATTTGA AATGATCTTT TTTATTATAA GAGTAGAAAT ACAGTTGGGT TTGAACTATA
  TGTTTTAATG GCCACGGTTT TGTAAGACAT TTGGTCCTTT GTTTTCCCAG TTATTACTCG
  M
  TTGTAATTTT ATATCGCCAG CAATGGACTG AAACGGTCCG CAACCTCTTC TTTACAACTG
  GGTGACCTCG CGGCTGTGCC AGCCATTTGG CGTTCACCCT GCCGCTAAGG GCCATGTGAA
  CCCCCGCGGT AGCATCCCTT GCTCCGCGTG GACCACTTTC CTGAGGCACA GTGATAGGAA
  CAGAGCCACT AATCTGAAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51676689	NES14820432	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A		C	A	A	C		A
ss321815785	CHEV_6_70674841	CHEVERUD	SCREENING_POP	f	SNP										C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36666673					SNP	A	A	A	A	A	A	A	A	A	C	C	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676689	NES14820432	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70701831 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	1599 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	1588 bp upstream
Igkj2	immunoglobulin kappa joining 2	1893 bp downstream
Igkj3	immunoglobulin kappa joining 3	1587 bp downstream
Igkj4	immunoglobulin kappa joining 4	1262 bp downstream
Igkj5	immunoglobulin kappa joining 5	924 bp downstream
Rr158	regulatory region 158	1104 bp proximal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	288 bp upstream
Rr399685	regulatory region 399685	700 bp upstream
Rr399686	regulatory region 399686	1664 bp upstream
Tssr56952	transcription start site region 56952	1996 bp downstream
Tssr56953	transcription start site region 56953	1300 bp downstream
Tssr56954	transcription start site region 56954	1168 bp downstream
Tssr56955	transcription start site region 56955	947 bp downstream
Tssr56956	transcription start site region 56956	961 bp upstream
Tssr56957	transcription start site region 56957	1583 bp upstream
Tssr56958	transcription start site region 56958	1630 bp upstream
Tssr56959	transcription start site region 56959	1648 bp upstream
Tssr56960	transcription start site region 56960	1671 bp upstream
Tssr56961	transcription start site region 56961	1685 bp upstream
Tssr56962	transcription start site region 56962	1693 bp upstream
Tssr56963	transcription start site region 56963	1742 bp upstream
Tssr56964	transcription start site region 56964	1757 bp upstream
Tssr56965	transcription start site region 56965	1763 bp upstream
Tssr56966	transcription start site region 56966	1774 bp upstream
Tssr56967	transcription start site region 56967	1789 bp upstream
Tssr56968	transcription start site region 56968	1813 bp upstream
Tssr56969	transcription start site region 56969	1849 bp upstream
Tssr56970	transcription start site region 56970	1862 bp upstream
Tssr56971	transcription start site region 56971	1882 bp upstream
Tssr56972	transcription start site region 56972	1908 bp upstream
Tssr56973	transcription start site region 56973	1946 bp upstream
Tssr56974	transcription start site region 56974	1978 bp upstream
Tssr61321	transcription start site region 61321	1635 bp downstream
Tssr61322	transcription start site region 61322	1800 bp downstream
Tssr61323	transcription start site region 61323	1815 bp downstream
Tssr61324	transcription start site region 61324	1905 bp downstream
Tssr61325	transcription start site region 61325	1971 bp downstream