rs36666710 SNP Detail

Summary

• ID
  rs36666710
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:18002404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTCATAC TAGAGAACTC
  AATCCTGTTC TGGATATCTG ATTCTTTTTG ATTAAACTAA TTTATATTTT TGCTTTAACT
  TATGAAAAGT CATATATACC TGGTAAAAGT TTAAATTACT TTTTAATTCA TAGGAAAAAT
  TGTCAATGTT GTTTTTACAC TTTAAGAAAT AACATGGTTA AAAGCCTGGG TATAAAATAT
  R
  CATTCTTTGG TTCTTTAAAA TATCTTCTAA GGTCAAGTTT ACATGTAAAC TTTCATGGGG
  GATAAATGTC AAAGAAGGGT TTTATACTAA AATTCTTCTA ACAAATATTT ATATGTCTTA
  TTCAAATTAT ATACTTGTGC TCAATTTAGA ATTTTCCATC TTTCAAACAT GCTTAAAAAA
  AGAGCTACTC ACTTGCTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51687557	NES14753959	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36666710					SNP	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51687557	NES14753959	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:18002404 () rs orientation: forward

Symbol	Name	Function Class
Cd36	CD36 molecule	within coordinates
Tssr50146	transcription start site region 50146	1931 bp upstream
Tssr50147	transcription start site region 50147	1824 bp upstream
Tssr50148	transcription start site region 50148	1798 bp upstream
Tssr50149	transcription start site region 50149	1750 bp upstream
Tssr50150	transcription start site region 50150	1724 bp upstream
Tssr50151	transcription start site region 50151	1705 bp upstream
Tssr50152	transcription start site region 50152	406 bp upstream
Tssr50153	transcription start site region 50153	338 bp upstream
Tssr50154	transcription start site region 50154	211 bp upstream