rs36666923 SNP Detail

Summary

• ID
  rs36666923
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109676937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGTAGAC TCATCATCAG
  GGCTTCTCCA TGATGCTGGA AGAGATGGTT TTCAATATGG CGTGTGTTCT TTCCTGCATG
  ATGGGAAATG ACATAATCTC CCCCTTCCTC TGCTGAGCTC TGCCTTGGGA ACTCTTGCCA
  TCTCTGGGGA GGAGACCACA AAGCTTTCTG GGATCAGTGC TCTTCGTGAC CTCAGTGACA
  K
  GGGTGTCTAG GCGACTCTTG GTTAGTAGAC TCCATGACCT GCTTCTTCTC AACACCATCC
  CTGAAGAGGT GTCCTGAGGC AACCTGGCAG ACATGAACCT TCTTACAGCT GTCCTTGCTG
  TCACGCGGTA CTTGAAGAAA TGGTTTACCG TCCCACATAC ATTTTGAGTA TGTATGTGGG
  ACGGTAAACC GCTTCTTGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51053035	NES14374800	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36666923					SNP	G	G	G	G	G	G	T	G	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51053035	NES14374800	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109676937 () rs orientation: forward

Symbol	Name	Function Class
B830012L14Rik	RIKEN cDNA B830012L14 gene	within coordinates
Gm54365	predicted gene, 54365	1276 bp downstream
Mir299a	microRNA 299a	135 bp upstream
Mir299b	microRNA 299b	142 bp downstream
Mir379	microRNA 379	1378 bp downstream
Mir380	microRNA 380	1300 bp upstream
Mir411	microRNA 411	247 bp downstream
Mir1197	microRNA 1197	1814 bp upstream
Mirc6	microRNA cluster 6, including Mir379 through Mir544	within coordinates
Mirc36	microRNA cluster 36, including Mir379 through Mir3072	within coordinates
Mirc44	microRNA cluster 44, including Mir1197 through Mir758	1814 bp proximal
Rr262534	regulatory region 262534	1462 bp proximal
Tssr115174	transcription start site region 115174	1377 bp downstream
Tssr115175	transcription start site region 115175	893 bp downstream