rs36667231 SNP Detail

Summary

• ID
  rs36667231
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:116692847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAAAGAAG GATTTAGTGT
  GTATTTTTTT TTATTTCCCC AAGGGATTTG GTGTACAGAG CTAAGAGCTC AGAACATTGC
  TCTTCAGTCC CTCAGTATAG GCTCTGCCCC TTCTGCATCG GTGGGGCTCA GGGTTAGGGC
  CAATTCTTTG CTAACTATCT GAAATTCCAG TCAGCTGAGC TGCTCAGGTG ATTTCTGGTC
  Y
  TCTAAGCCTC ACGCTATGCT CCTGTAGATG GCTCATACCA AAGAGGCTGG TTTTCAACAA
  TGCATTTTTC CAGAAGGGTG TGGGGAGGGC ACCGTGGAAG CTTGCCATCT TTCTACCTAT
  CAGGTCTCCT GAGGATAGAG TTGCCCCATT AATGGGATTC TCTCTGCAGA AGATAGGACT
  ATTGTCAAAC AAAGCAAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51859018	NES14881830	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36667231					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51859018	NES14881830	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116692847 () rs orientation: forward

Symbol	Name	Function Class
Rr142500	regulatory region 142500	1989 bp proximal
Rr145611	regulatory region 145611	154 bp proximal
Rr147145	regulatory region 147145	648 bp distal
Tmem72	transmembrane protein 72	within coordinates
Tssr62610	transcription start site region 62610	740 bp downstream
Tssr62611	transcription start site region 62611	833 bp downstream
Tssr62612	transcription start site region 62612	851 bp downstream
Tssr62613	transcription start site region 62613	1002 bp downstream