rs3666939 SNP Detail

Summary

• ID
  rs3666939
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:120547111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCA AGAATGTGTA TAAAAGGATA
  R
  ATGTAGTTAT AACACTATGC CATTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5042889	WI_WGS_2_121672513	WI	MOUSE	f	SNP			G	A
ss45361617	mCV25281079	ABI	CRAMUS_MOUSE	f	SNP	G	G		A	G
ss147367237	ENSMUSSNP3659281	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G			G
ss320479588	CHEV_2_120542366	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3666939					SNP	G	G	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120547111 () rs orientation: forward

Symbol	Name	Function Class
Cdan1	codanin 1	within coordinates
Stard9	StAR related lipid transfer domain containing 9	within coordinates