rs36670049 SNP Detail

Summary

• ID
  rs36670049
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122521837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATGTGTAGA TATGGGGTGG GGGTGGGGTT CACCAACAAG
  GGGAAACTCC CTATTCGCTA AGCATATTTA ATGTCATAGT AACATATCAG GAGAGAACTG
  Y
  CATTTTAAAA TCTAATATAA TTTATCATGT GTTGCTTTGG TCATGGAATT TTATCACAGC
  AATAAGCAAT GTAAGGCAAT ACTATTTCTG AGGTATCGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51612614	NES14661342	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		T	T	C		T
ss320914162	CHEV_3_122431106	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36670049					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51612614	NES14661342	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122521837 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13771	CpG island 13771	604 bp proximal
Pde5a	phosphodiesterase 5A, cGMP-specific	985 bp upstream
Rr584392	regulatory region 584392	280 bp proximal
Rr584393	regulatory region 584393	734 bp proximal
Rr584394	regulatory region 584394	892 bp proximal
Rr584395	regulatory region 584395	1393 bp proximal
Tssr31509	transcription start site region 31509	756 bp upstream
Tssr31510	transcription start site region 31510	816 bp upstream
Tssr31511	transcription start site region 31511	931 bp upstream
Tssr31512	transcription start site region 31512	975 bp upstream
Tssr31513	transcription start site region 31513	1010 bp upstream
Tssr31514	transcription start site region 31514	1521 bp upstream
Tssr31515	transcription start site region 31515	1662 bp upstream
Tssr31516	transcription start site region 31516	1682 bp upstream
Tssr31517	transcription start site region 31517	1730 bp upstream
Tssr31518	transcription start site region 31518	1859 bp upstream
Tssr31519	transcription start site region 31519	1925 bp upstream
Tssr31520	transcription start site region 31520	1948 bp upstream