rs36670341 SNP Detail

Summary

• ID
  rs36670341
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109594394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATAAACAC ATCAATGAAT
  AAAGCAGCAA GCACTGGGAG AAAGTATATC AATAGGTATA TAGAGCAGCG AGTTTTCTAA
  GATGTGTGAA TCAAAGAGTT TGGCCTAAAT AACTCACAGG TATATCAGAA CAAGAAACCA
  TCCTGGTGTA AGCCATGCTT CTAACACAGC TGGATATATT GAAAGAACTT GGTCTTAGCT
  S
  TCCACATCTG TGACTTGTAT TATAATGGGA CAGATTCAGG AATGAATAAA GATGGCCAAT
  TTTTAAAAAG CAAAGACAAG AATGAAAAGA AACAAATATT ATCATTCGTT GTTGTTATCT
  TCTGACCCAC TGAGCTTCAT TCTCCACATA GATCAAGTCT TTTTGACCAT TCCCCTGAAG
  GACATGTCCT GGGTCATGAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51054051	NES14376586	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36670341					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51054051	NES14376586	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109594394 () rs orientation: forward

Symbol	Name	Function Class
Rian	RNA imprinted and accumulated in nucleus	within coordinates
Tssr115150	transcription start site region 115150	1112 bp upstream