rs3667080 SNP Detail

Summary

• ID
  rs3667080
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:158725425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCA GCTCTCTCAT GTCATGGTGA
  K
  GATCAGCCCT TGAATAACCT TATTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J
ss5043030	WI_WGS_X_137044477	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J
rs3667080					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:158725425 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr694730	regulatory region 694730			96 bp proximal
Sh3kbp1	SH3-domain kinase binding protein 1			Intron
				Noncoding-Transcript-Variant
Tssr162525	transcription start site region 162525			1982 bp downstream
Tssr162526	transcription start site region 162526			717 bp downstream
Tssr162527	transcription start site region 162527			254 bp upstream
Tssr162528	transcription start site region 162528			415 bp upstream
Tssr162529	transcription start site region 162529			460 bp upstream
Tssr162530	transcription start site region 162530			476 bp upstream
Tssr162531	transcription start site region 162531			493 bp upstream
Tssr162532	transcription start site region 162532			519 bp upstream
Tssr162533	transcription start site region 162533			551 bp upstream
Tssr162534	transcription start site region 162534			571 bp upstream
Tssr162535	transcription start site region 162535			617 bp upstream
Tssr162536	transcription start site region 162536			662 bp upstream
Tssr162537	transcription start site region 162537			1979 bp upstream