rs36671259 SNP Detail

Summary

• ID
  rs36671259
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:66845515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGGTAAT TAGATAGGAC
  TGTAGGGTGA TGTTACAGTG ACCACAGACA AGTGAAGGAA TCAGAAATCA GCACACAATG
  ACGGACTGGA TTTTTTTCAC CATTATTTGA ATCACTCTGT AAACTACTAA CTCTATTGAG
  TGTTCCCGGC ACCAGCATTA TCAAGTGTGA TGTGGATAGT CATAAAGTAA GTTTTAAAAA
  Y
  CTTGTTTGTG CTTATTGGAT GCTTGGTTGT AAGATGAGTT TTAAATTCAA ATATCATATT
  TAAGAGAATC CAAATGACTC TTTCTGCGTA TACTCTAGTA ACGTTGATCT TGCATGTTTA
  ACTAAATTTA TGCCTAGATT GAAGAAATGA GTTTTTGTAT GTATTCTCCA GGAAACATTT
  GTTCTAAATG TGTTTATACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50972610	NES13935051	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36671259					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50972610	NES13935051	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:66845515 () rs orientation: forward

Symbol	Name	Function Class
Rr61	regulatory region 61	141 bp proximal
Rr366707	regulatory region 366707	within coordinates
Rr406700	regulatory region 406700	1156 bp distal
Rr577871	regulatory region 577871	1517 bp proximal