rs36672156 SNP Detail

Summary

• ID
  rs36672156
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:126910986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATTGTGA ACCACCATGT
  GGTTGCTGTG ATTTGAACTC AGGACCTTTA GAAGAGCAGA CAGTGCTCTT AACCACCGAG
  CCATCTCTCC AGCCTTGATT TCTGTGTTTC TCTAAGATAA ATTTGCAAAT CACCAAGAGT
  ATGGATCCTA CCTGAAATTC TACTGGCCAC ATTCTCCCAG AATCCACGGC CATCTTAATT
  Y
  GCTACCTCCC ACTGAGGCAG TGGGACTGCT TATTAAGGTT GCTCCATTCA CCTGACTGAG
  CAATCATAAC CGGGGCTGGC TGTCGGAGCT GAAGGGCCAA CGCTAGAGGG GGCAGGAGGT
  GTAAGAGGTA GTGCAGTGTG GGTTGTGGGT TTGAAGCTCA CCAGTCAGGA AGTGAGGCCG
  ACAGACGGAA GGGCGGGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50942025	NES14261653	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36672156					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50942025	NES14261653	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:126910986 () rs orientation: forward

Symbol	Name	Function Class
Agap2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	168 bp upstream
Rr213500	regulatory region 213500	within coordinates
Rr224393	regulatory region 224393	14 bp proximal
Tssr96119	transcription start site region 96119	148 bp upstream
Tssr96120	transcription start site region 96120	212 bp upstream