rs36672640 SNP Detail

Summary

• ID
  rs36672640
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:80449875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGTTACA CCGTAAGATG
  CTGTTCTTGG AAAAAAAGGG GAAAACATCC AAGTTCAGCT GTTACAGATT CTCACATCAG
  GCTTCTGCTT ATATAAAGAT TTCTTTTGGA CTTTGACGAG TTCTCATGTA GCCCATGCTG
  ATCCTGAATT CACAGTAGTC CTCCTGCCTC AGTGTAAGTG TGCTGCATCC CCTTCCTCAT
  R
  CTAAGCTTTA GTTCATACAT TTCCTTTTAG CTATTTCAGG CAGAACACAT GACATCATAG
  AAGGGACCTC AGTCAGCCTG GCATGGAGGT GTAACATCAG GCCCGTGCTC CTTTGCTTTA
  GACAAAGGCT GGCCACCTGC GACGGCAGCT TTTCCTACGT ACTTTGCTGG GCCAGGAGGG
  GTTCGAGCTA AAAGGGGATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50523622	NES13681171	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36672640					SNP	G	G	A	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50523622	NES13681171	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:80449875 () rs orientation: forward

Symbol	Name	Function Class
Ctdp1	CTD phosphatase subunit 1	1299 bp downstream