rs36674039 SNP Detail

Summary

• ID
  rs36674039
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:25189985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGGCTACA GTGCACCCAC TGTGTGCAGA CAGCTGTTCA
  GGGGGACACA GACTCATTCC ACCACAGGAA ATGCCATCAA CAAGTCTCAG ATACGACAGG
  M
  AGACAGCCAC AATTCGGACT CCGTAGGGAC AGGTCCCAAT TCTTTCCTGC ACAACCCCTT
  CCAGAACAAT CTTCAAGCAT TTTGAAATGT TTTTGAACTT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss51082742	NES13879772	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs36674039					SNP	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51082742	NES13879772	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:25189985 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1500035N22Rik	RIKEN cDNA 1500035N22 gene			855 bp upstream
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6			within coordinates
Prkag2	protein kinase, AMP-activated, gamma 2 non-catalytic subunit			Intron
				Noncoding-Transcript-Variant
Rr608457	regulatory region 608457			978 bp distal
Rr608458	regulatory region 608458			1370 bp distal
Rr608459	regulatory region 608459			1233 bp distal
Rr608460	regulatory region 608460			331 bp proximal
Rr608461	regulatory region 608461			883 bp proximal
Tssr45452	transcription start site region 45452			853 bp upstream