rs3667464 SNP Detail

Summary

• ID
  rs3667464
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:67470543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCT GCCTCCCCTT TAAGCCTGAA
  R
  TTAAAGACCT GGAGTTAGGG TACAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5043415	WI_WGS_14_58368090	WI	MOUSE	f	SNP			G	A
ss39213129	mCV25264756	ABI	CRAMUS_MOUSE	f	SNP	G	G		A	G
ss139643654	ENSMUSSNP790475	ENSEMBL	ENSEMBL_Sanger	f	SNP		G			G
ss324659623	CHEV_14_67851931	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3667464					SNP	G	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:67470543 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6657	CpG island 6657	839 bp distal
Cpgi6658	CpG island 6658	123 bp proximal
Cpgi6659	CpG island 6659	1087 bp proximal
Cpgi6660	CpG island 6660	1806 bp proximal
Ebf2	early B cell factor 2	198 bp upstream
Gm20675	predicted gene 20675	within coordinates
Rr297418	regulatory region 297418	within coordinates
Tssr126327	transcription start site region 126327	88 bp upstream
Tssr126328	transcription start site region 126328	192 bp upstream
Tssr126329	transcription start site region 126329	341 bp upstream
Tssr126330	transcription start site region 126330	808 bp upstream
Tssr126331	transcription start site region 126331	1494 bp upstream
Tssr126332	transcription start site region 126332	1526 bp upstream
Tssr126333	transcription start site region 126333	1637 bp upstream
Tssr126334	transcription start site region 126334	1701 bp upstream
Tssr126335	transcription start site region 126335	1751 bp upstream