rs36675223 SNP Detail

Summary

• ID
  rs36675223
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:6167367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATTTTTT TTTCTTCAAG
  GGGATTCAAA TTTTTCAATT GTCGGTCACA TCAATAGCAT GTACTTTCTT ATGCATCAGC
  CCATAAAACA GTGATATCCA TAAAGCAAGA ACGTCTTACA TGAACTTGAT CGAGAACTAA
  GAGGGCACTA CATTCCATTT TACTCACTCA GAAATAGTGC TGAAATGAAG TTACCCACAT
  S
  TATATCCTCT TCAGTGCTGG GTGGTAGAGT AACTTGTAAA GTCTGTATTG TCATAACCCC
  CTCCCTTCTC AGCCACTTCT AATGAATGAA TATCATGTAT GTCCTATTCT CTAGACTTTC
  AGGCCTTAAA GATGTTGGGA CTTTTGTATC ACAAACGTCA CTGATGAACA GCTGAGGAAA
  TATGTATGCT TGATTGAGAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50640671	NES14035667	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36675223					SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50640671	NES14035667	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:6167367 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21338	CpG island 21338	1033 bp proximal
Pdgfd	platelet-derived growth factor, D polypeptide	1217 bp upstream
Rr673696	regulatory region 673696	727 bp proximal
Rr673697	regulatory region 673697	1160 bp proximal
Tssr2757	transcription start site region 2757	1311 bp upstream
Tssr83664	transcription start site region 83664	1082 bp upstream
Tssr83665	transcription start site region 83665	1103 bp upstream
Tssr83666	transcription start site region 83666	1186 bp upstream
Tssr83667	transcription start site region 83667	1203 bp upstream
Tssr83668	transcription start site region 83668	1234 bp upstream
Tssr83669	transcription start site region 83669	1271 bp upstream