rs3667537 SNP Detail

Summary

• ID
  rs3667537
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19298026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTA TCTGGACGCC TCAGCTTCAT
  K
  GCTTAGATAA GCCCCACAAG TTTTA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5043488	WI_WGS_7_14603890	WI	MOUSE	f	SNP							G	T
ss48163348	NES11822660	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	G	G		G	G	T	T		G	G	G	G		G
ss148478882	ENSMUSSNP139872	ENSEMBL	ENSEMBL_Sanger	f	SNP		G								G
ss322117459	CHEV_7_20149450	CHEVERUD	SCREENING_POP	f	SNP													T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3667537					SNP	G	G	T	T	T	G	G	T	G	G	T	T	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163348	NES11822660	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19298026 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18499	CpG island 18499	1292 bp distal
Gemin7	gem nuclear organelle associated protein 7	848 bp downstream
Ppp1r37	protein phosphatase 1, regulatory subunit 37	1025 bp upstream
Rr643188	regulatory region 643188	1594 bp distal
Rr643189	regulatory region 643189	535 bp distal
Rr643190	regulatory region 643190	466 bp proximal
Rr643191	regulatory region 643191	550 bp proximal
Tssr70928	transcription start site region 70928	1935 bp upstream
Tssr70929	transcription start site region 70929	1904 bp upstream
Tssr70930	transcription start site region 70930	1853 bp upstream
Tssr70931	transcription start site region 70931	1700 bp upstream
Tssr70932	transcription start site region 70932	1664 bp upstream