rs3667653 SNP Detail

Summary

• ID
  rs3667653
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88433967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAC TGGCATAGAG AATAAGTGTT
  Y
  CCCATGCCAG CTGCAGTGGG CAGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5043605	WI_WGS_11_89210063	WI	MOUSE	f	SNP	T	C
ss132535288	ENSMUSSNP2376550	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
ss323779795	CHEV_11_88356643	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3667653					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88433967 () rs orientation: forward

Symbol	Name	Function Class
Msi2	musashi RNA-binding protein 2	within coordinates
Rr454130	regulatory region 454130	976 bp distal
Tssr110018	transcription start site region 110018	1495 bp upstream