rs36676690 SNP Detail

Summary

• ID
  rs36676690
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:51641615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTGAACT CAGGGTTCAT
  CAGGAAGCTC CTGTCAACAT ATAGCTGTTT CCTAGATAAT GGAATGGGCA GAGAGTCAAA
  CGGATACTAT GCTTCAACTG ACAGTGAAGA AGCAGCAGGA TTGGTGGCAG CAGAAGTAGC
  TGTTGACAGA ATCTGAAAGT TAGTTCTTGT GTTTATACCT CCATTTTCTA AATCCTACAC
  Y
  TGTACCAAAA GCAGTATTTA TCCAATGTTT GCTAGAGTAG GAGTGGCTGA GTTGGCACCA
  CAGAGCAAAA CAAGAAACAT CACATGTGAA ATTACCAAAG TGGCCACAGC AGAGAGATCA
  GCAATGCTAG AGACTGACAA GACTTGAAAA CTTGAGAAGC TACATATGCA ACTGAAGCCA
  TGGGTCCCTC GTCGTGTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51115400	NES13865356	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36676690					SNP	C	C	C	C	T	C	C	C	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51115400	NES13865356	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:51641615 () rs orientation: forward

Symbol	Name	Function Class
Gm42614	predicted gene 42614	within coordinates
Ppargc1a	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	within coordinates