rs36676870 SNP Detail

Summary

• ID
  rs36676870
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:101204602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGAACTTT GATCTTGCAT TTCCTTAGCT
  CATTTGGATT TTCTTCCTGC TGGAACAACC TCTTTCTTTT GTCCCATAGA TTACTCGTGA
  AGGGTTGGAA GAATGTGGAG GTCATTTGTT GCAGAGGGCT TAGGAGAGAA GCGGCTGGCC
  Y
  CGGTCTCAGG GTTGGAGGGT GACAGGAAGA GTAGAAGCCA TCGGAGTCTG GTTCAGTCTC
  TTTCTACTCT GTGGATAAGT TTTCTTTGAG TTTTGGGTAA GACAACTTTG GAAGTTGAGC
  CTGTAGCATA ATGTGTAGGG AGACCTCATT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50784755	NES14209263	PERLEGEN	MM_PANEL2	f	SNP	C	C	C		T	T	T		C
ss323149599	CHEV_9_101229733	CHEVERUD	SCREENING_POP	f	SNP				T				C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36676870					SNP	C	C	C	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50784755	NES14209263	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101204602 () rs orientation: forward

Symbol	Name	Function Class
Rr198413	regulatory region 198413	999 bp proximal
Rr202333	regulatory region 202333	1772 bp distal
Rr202334	regulatory region 202334	1270 bp distal
Rr206996	regulatory region 206996	3 bp distal