rs36676951 SNP Detail

Summary

• ID
  rs36676951
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149151986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATTAGGCTT CTCTATGGAA AATCGGTAAA ACCAGCTGTT
  GAACCAAACT GGTCACAGTT ATGAGGAAGC TGGTGTTGAC ATGATATGAG CCAAGTGACA
  Y
  AGGTTAGGTA TCTTTCAGTG CTAATCTCTC AGCATAAACA CACAAGCATT TACAGAGGGC
  AAGAGAGATC TCCCAGCATC TGCCCTGTTG CTGCTGTTGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51052112	NES13892927	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36676951					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052112	NES13892927	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149151986 () rs orientation: forward

Symbol	Name	Function Class
A630039O03Rik	RIKEN cDNA A630039O03 gene	within coordinates
Gm30382	predicted gene, 30382	848 bp upstream
Rr398127	regulatory region 398127	525 bp downstream
Rr587324	regulatory region 587324	1248 bp distal
Rr587325	regulatory region 587325	714 bp distal
Tssr36100	transcription start site region 36100	1105 bp upstream
Tssr36101	transcription start site region 36101	1084 bp upstream
Tssr36102	transcription start site region 36102	1071 bp upstream
Tssr36103	transcription start site region 36103	980 bp upstream
Tssr36104	transcription start site region 36104	932 bp upstream
Tssr36105	transcription start site region 36105	854 bp upstream