rs36678272 SNP Detail

Summary

• ID
  rs36678272
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:51728709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCCATACC CCCATTCCGG
  CCCCGTTTCT CAGCACTCAG GTCTCTCGTC GGAAAACAGG GAAGGCTGCG GTGTCTTTCG
  AGCAAAAGTG AAGATGAAGG AGAAGGGCGC CGAGGGGAGA GCGCGGTCAG CCCGCGCCTG
  GGGAAGGCGG CAGGAAGCGC GCCCGGCAGG GATCAGCCTC ACACGTGGGC CTGTGGCCGC
  R
  ACCCGCACTC ACCAGGCCGT CGATCTGCAC CTGCTTCACG GCCGAATCTC CGGAGCCGCC
  TTTGCCTTTG CCCTTCCCCA CCGCGCCGCC AGCAGAACCG GAGGAGGTGG CGGTAGAGCC
  GGTGCCTTCC TTGCGCGACG CCATGTTTCC AGCCAGACAG GAAGAAAGAG AAGCGTGAGG
  CGCCGGAAGC GGAACTACGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51665650	NES14579642	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	G		A	A		A
ss324965544	CHEV_15_51696859	CHEVERUD	SCREENING_POP	f	SNP									A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs36678272					SNP	A	A	A	A	G	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51665650	NES14579642	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:51728709 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7083	CpG island 7083	within coordinates
Eif3h	eukaryotic translation initiation factor 3, subunit H	within coordinates
Rr311732	regulatory region 311732	within coordinates
Rr404375	regulatory region 404375	132 bp upstream
Tssr134286	transcription start site region 134286	135 bp downstream
Tssr134287	transcription start site region 134287	185 bp downstream