rs36678278 SNP Detail

Summary

• ID
  rs36678278
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110229081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT GTGTGTGTGT
  GTGTGTAAGG TGGAGAGCGC CTGATTATCG CCTGTGGATG AAGAAAAAAC ATTGTGTTTC
  CTATAATCTA TTTACATAAA ATATGTGATC TGGGAAAAAG CAAACCAATA AACTGTCTCA
  ATGCTGATTC ATTCTCGGTT CATGCATTTG GGGAAGGATG GTGGTCTGGG TTTGGGTCGG
  Y
  CTGGAAGTGC TGAGATTCTG CTTCTTGTTT TGGGAAGATT GAACTGCATT GTGGGTGCAA
  AGCAACCTCT CTAAGCAAGG CTTACCTGTT GTGAGCTCTG GTGTCCATGT GGATGCACAA
  AGCGCGTGTC CTGGGAGGGA GTCAAGAGTT CTCTGAGATA CCCGAGTTCA CCTCCTTGCA
  TGGCAACCAG ACCGGGTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50455957	NES14118599	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C		T	T	C	T		C
ss322397534	CHEV_7_117773388	CHEVERUD	SCREENING_POP	f	SNP									C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36678278					SNP	C	C	C	C	C	C	C	C	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50455957	NES14118599	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110229081 () rs orientation: forward

Symbol	Name	Function Class
Adm	adrenomedullin	54 bp downstream
Cpgi19577	CpG island 19577	602 bp distal
Cpgi19578	CpG island 19578	431 bp proximal
Gm28863	predicted gene 28863	within coordinates
Gm72687	predicted gene, 72687	within coordinates
Rr400547	regulatory region 400547	333 bp upstream
Rr653271	regulatory region 653271	within coordinates
Rr653272	regulatory region 653272	338 bp proximal
Rr653273	regulatory region 653273	471 bp proximal
Rr653274	regulatory region 653274	1839 bp proximal
Tssr68501	transcription start site region 68501	1329 bp downstream
Tssr68502	transcription start site region 68502	343 bp downstream