rs36679684 SNP Detail

Summary

• ID
  rs36679684
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131564586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGGGCCA GGTCTGCTTT
  GGTAAAATAT GTACCTTGGC TGTTTGTTCC AGAGTAAGAA ATCAAACACT GTAAAGGAAG
  CACTATTGGA TCAGAGAGGA GCTACAAGCC ATCTCTTCTC TCCAGACTGG CCTTGAACTC
  ATAATCCTCC TCCTCCTGTC TTCCAAAGAC TGGAACAGTT GTTTCCAACT GTGATGACAA
  R
  AGGAGGCACT TGCCTTTGTT ACCTTGGCCT GTTCCAGGTA AGAGGGTTCT AGGCACACAG
  GCATGCTAAC AGGCCATAGA GTCCTTTCTC CTTCAGTGAG CATCTGAAAT CACTGGTAAG
  AAATGGGCCT CATCATGTCA CCCAGGATAA AAAATTAAAA TAAAATAAAA TAAAATAAAA
  TAAAATAAAG GTGGGGAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss51367002	NES14473901	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs36679684					SNP	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51367002	NES14473901	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131564586 () rs orientation: forward

Symbol	Name	Function Class
Ctse	cathepsin E	1466 bp upstream
Rr12195	regulatory region 12195	615 bp proximal
Rr28482	regulatory region 28482	1014 bp proximal
Rr35674	regulatory region 35674	1977 bp distal
Rr366988	regulatory region 366988	1366 bp upstream
Tssr8635	transcription start site region 8635	1422 bp upstream
Tssr8636	transcription start site region 8636	1458 bp upstream
Tssr8637	transcription start site region 8637	1506 bp upstream
Tssr8638	transcription start site region 8638	1540 bp upstream
Tssr8639	transcription start site region 8639	1592 bp upstream
Tssr8640	transcription start site region 8640	1637 bp upstream