rs36680851 SNP Detail

Summary

• ID
  rs36680851
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34922456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGTGCTGG AGAGGACCCG
  GGAGGGGTAT CCACGGCTGG TTAGTCTGAA GAGGAGTTTT CACGGTATGC TCTCCAAGTC
  ACGATGAGCA GACCAGAAGA TGTGTCCAGA CGGAGTAGAG AAACTCCCCA GAGGAGAAAT
  CTATTTTTCT ATTTAAGGGG AAGATCAGCT CAGAGCCCTT TGGAGACATC TACCAGCTGG
  Y
  CAACTGGTCC CCGCACACAA TGGTGTCCAT AGTCCACTCC CTAAAAGTCC TATGGGCCCG
  TGCCACAAGC CCAGAACACA AAGCAGGAGC CCAGGTGGAT GAGGACGGAA GGGCGCTAGA
  GCACATCCTG GAGCATGCTG GATGGAGCCC TGAGGAGGGA CAGATGGCAG ACATAGACAT
  GCTCTCCCTG GGGAGAAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50525775	NES14089087	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36680851					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50525775	NES14089087	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34922456 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20247	CpG island 20247	232 bp proximal
Gm39159	predicted gene, 39159	within coordinates
Gm45349	predicted gene 45349	within coordinates
Gm46038	predicted gene, 46038	1616 bp upstream
Rr400818	regulatory region 400818	26 bp upstream
Rr662016	regulatory region 662016	33 bp proximal