rs3668133 SNP Detail

Summary

• ID
  rs3668133
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:19298115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTGCCCA CCTCGGGTCA
  ATTTCTTATG CAGAGATGAA TGTCAGCCAT TTGGGGAGGA TGCCAGGAGC AGTGCAAGCC
  CTATACTTTT ATCTGGACGC CTCAGCTTCA TTGCTTAGAT AAGCCCCACA AGTTTTAGCC
  TGAGATAGCT ACACTACTAA CTTTTAAAGA CTACAGCAGA GGGTGGGAAG ACAGCTCAGC
  W
  ACTCCGTTCC AGAGGGCCTG AATTCTGCTC TCAGCACCCA TAGTTCACAA GCACCTGTAA
  CCCTAGCTTT GCTGACTGCC TATCTTTTTC TGGTCTCCGT GTGCACCCAC ACTCCCATGG
  CACACAGACA TAAACACCTC CATTTAAAAA TTTTAAAACA AAGAAATGTT AAGCATGGCA
  CCACTCTCCA TGGGATACAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J
ss5044088	WI_WGS_7_14603979	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J
rs3668133					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19298115 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18499	CpG island 18499	1381 bp distal
Gemin7	gem nuclear organelle associated protein 7	759 bp downstream
Ppp1r37	protein phosphatase 1, regulatory subunit 37	Noncoding-Transcript-Variant
Rr643188	regulatory region 643188	1683 bp distal
Rr643189	regulatory region 643189	624 bp distal
Rr643190	regulatory region 643190	377 bp proximal
Rr643191	regulatory region 643191	461 bp proximal
Tssr70929	transcription start site region 70929	1993 bp upstream
Tssr70930	transcription start site region 70930	1942 bp upstream
Tssr70931	transcription start site region 70931	1789 bp upstream
Tssr70932	transcription start site region 70932	1753 bp upstream