rs36681372 SNP Detail

Summary

• ID
  rs36681372
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3404527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTATTTA AAAGTTGTAG
  GACTTGAGAA TCCTGGGAGA TAGTCCACTC ACTTCTCTCG TTACTTCGGT ATCTCACCTT
  GTCTGATTTT GGTCTTTTTC CAATGCAGTT GTCTTCTAAA CGCTCGGACC GGCTCCATTT
  GCTATTTCTC TCCGCAAAAA GATTGATTGG TTTCCTTCCA GTTTCCTTAG TTTTTAAGCA
  S
  TCTTGATATT TCAGCCGCCT GGATTGCTCA GTTTCTGTGT CCAGTGTCAC ATCCGAGGAC
  TCTTCTTACC AGTTAATTCG AAGCATGAGT CATTGCCCCG GCTTATTGGA AGTAGGACAC
  ATTTGAATAC GTTGGTGTTT CCTCCACGTT TTCCTTTCAA CTCCAGGCTT AGGCCAGCCT
  TTACTGATTG AAACACTGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50638817	NES14033319	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36681372					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50638817	NES14033319	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3404527 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21331	CpG island 21331	352 bp distal
Cwf19l2	CWF19 like cell cycle control factor 2	within coordinates
Rr401237	regulatory region 401237	859 bp downstream
Rr673633	regulatory region 673633	1410 bp distal
Rr673634	regulatory region 673634	925 bp distal
Rr673635	regulatory region 673635	1206 bp distal
Rr673636	regulatory region 673636	971 bp distal
Rr673637	regulatory region 673637	within coordinates
Tssr83616	transcription start site region 83616	477 bp downstream
Tssr83617	transcription start site region 83617	429 bp downstream