rs36682271 SNP Detail

Summary

• ID
  rs36682271
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70702906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGTCACC CAAGAGTTGG
  CATCTCAACA GAGGGGACTT TCCGAGAGGC CATCTGGCAG TTGCTTAAGA TCAGAAGTGA
  AGTCTGCCAG TTCCTCCCAG GCAGGTGGCC CAGATTACAG TTGACCTGTT CTGGTGTGGC
  TAAAAATTGT CCCATGTGGT TACAAACCAT TAGACCAGGG TCTGATGAAT TGCTCAGAAT
  R
  TTTCTGGACA CCCAAATACA GACCCTGGCT TAAGGCCCTG TCCATACAGT AGGTTTAGCT
  TGGCTACACC AAAGGAAGCC ATACAGAGGC TAATATCAGA GTATTCTTGG AAGAGACAGG
  AGAAAATGAA AGCCAGTTTC TGCTCTTACC TTATGTGCTT GTGTTCAGAC TCCCAAACAT
  CAGGAGTGTC AGATAAACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51676665	NES14820445	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	G	A	G		G	G	A	G		A
ss321815795	CHEV_6_70675916	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36682271					SNP	A	A	G	A	A	A	G	A	G	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676665	NES14820445	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70702906 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	524 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	513 bp upstream
Igkj5	immunoglobulin kappa joining 5	1999 bp downstream
Rr158	regulatory region 158	29 bp proximal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	487 bp downstream
Rr399685	regulatory region 399685	75 bp downstream
Rr399686	regulatory region 399686	589 bp upstream
Tssr1880	transcription start site region 1880	928 bp upstream
Tssr56956	transcription start site region 56956	89 bp downstream
Tssr56957	transcription start site region 56957	508 bp upstream
Tssr56958	transcription start site region 56958	555 bp upstream
Tssr56959	transcription start site region 56959	573 bp upstream
Tssr56960	transcription start site region 56960	596 bp upstream
Tssr56961	transcription start site region 56961	610 bp upstream
Tssr56962	transcription start site region 56962	618 bp upstream
Tssr56963	transcription start site region 56963	667 bp upstream
Tssr56964	transcription start site region 56964	682 bp upstream
Tssr56965	transcription start site region 56965	688 bp upstream
Tssr56966	transcription start site region 56966	699 bp upstream
Tssr56967	transcription start site region 56967	714 bp upstream
Tssr56968	transcription start site region 56968	738 bp upstream
Tssr56969	transcription start site region 56969	774 bp upstream
Tssr56970	transcription start site region 56970	787 bp upstream
Tssr56971	transcription start site region 56971	807 bp upstream
Tssr56972	transcription start site region 56972	833 bp upstream
Tssr56973	transcription start site region 56973	871 bp upstream
Tssr56974	transcription start site region 56974	903 bp upstream
Tssr56975	transcription start site region 56975	936 bp upstream
Tssr61321	transcription start site region 61321	560 bp downstream
Tssr61322	transcription start site region 61322	725 bp downstream
Tssr61323	transcription start site region 61323	740 bp downstream
Tssr61324	transcription start site region 61324	830 bp downstream
Tssr61325	transcription start site region 61325	896 bp downstream
Tssr61326	transcription start site region 61326	931 bp downstream
Tssr61327	transcription start site region 61327	945 bp downstream
Tssr61328	transcription start site region 61328	1036 bp downstream