rs36682300 SNP Detail

Summary

• ID
  rs36682300
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85810948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTTAGAG ATCCACCTGC
  CTCTGCTTCC CAAATCCTGG GATAAAAGGT GTTCACTACC ACTACCTGGC TTAGAGTTGA
  ATCTTAATGA ACAGAGAGGG CAAGAGCTAG ATCAGAAGGG GGTGGAGTCA TCCTAGAGAA
  CTCCTTAGCA GTGTCCTGAT GTCCTCCAGA GTTTCAGAAG GTGAGAGGAG AGTTGAGGTC
  Y
  AAGGACAGAG TGTCATTTCC CCCGACTGTG GTGACAAAAA CTCTTTGTGA TGTAACTTGG
  GAGTCTCTGC TGTGGCACAG ATACTAGGTC ACATGACAGA CTGCAGCGCC CCTCACACAC
  CCAAGATTCT TCTTCCCAAC TTCTTGGTGC ACACATCCAC TTTCTGTTGC CTGATTCCTG
  ATCTGTTTCC ATAAGTGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss51034525	NES14384595	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs36682300					SNP	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51034525	NES14384595	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85810948 () rs orientation: forward

Symbol	Name	Function Class
D12Mit256	DNA Segment, Chr 12, Massachusetts Institute of Technology 256	1320 bp proximal
D12Mit256.3	DNA segment, Chr 12, Massachusetts Institute of Technology 256.3	1234 bp proximal
Flvcr2	feline leukemia virus subgroup C cellular receptor 2	within coordinates
Rr261860	regulatory region 261860	1548 bp distal
Rr261861	regulatory region 261861	within coordinates
Rr268751	regulatory region 268751	854 bp proximal