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rs36682599 SNP Detail
Summary
  • ID
    rs36682599
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:130371349 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAAGTACTAT TTAGAGTCCT
    AAGACTAAGA AGAAAACTAT GTGGAATCGG CCTGCCTTAA TGCAAACAAT GCATACATTT
    ACATAGCTAA AGTAAATAGC CCCCATTATT CCTTCTTAAC CCATAAGGAA GATATTTTCA
    TTGGGCCCTC ATCCAGGAAG TTGAAGTCAA TGGGCTAAAA CTTCCAGAAC TACATATTCT
    R
    GTTGGTAATC TTAACACAAA GCTACTGTGT TCATTCTGAG TAAATTATAA TGTTTTTCCA
    AAGGAAATTA CAAAACCTAC GTGGTCTTCT CCACACGGTT ACCTATGTTC TCATTTTTCT
    TTCGAGGGTT AAAGAATGAC CTGTTTTCCT CTAGCCATAA GGAAATGATT TGGTGCGTTA
    TAAAGCAAAG CCCTTTCACC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss51627680 NES14659871 PERLEGEN MM_PANEL2 f SNP A A A A A A G A A A A A G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs36682599 SNP A A A A A A G A A A A A G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51627680 NES14659871 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:130371349 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Col25a1 collagen, type XXV, alpha 1 Intron
Rr585177 regulatory region 585177 713 bp distal
Rr585178 regulatory region 585178 796 bp distal
Rr585179 regulatory region 585179 1806 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory