rs36682899 SNP Detail

Summary

• ID
  rs36682899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:43483992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTACCTACC AGCCTGCCCC
  ACCTTGGCTC CTCTCTACCT TCAGTCTTAT AAGTTCAGCC TTTAAACTAA TTTGTAGTAT
  AGTCTCTAAA TATTTTGTTT CCTTCCCTCA GAAATGTTTA TCTACAATTT GTAATAGAAT
  AGAAACAACA GAATTTAGTC TCTCATATTA GTGGTAGACT ATGAAAATCT GAGAAGCAGG
  Y
  ATTTCTGACC AACAGAGAAC TAACTGGAAC ATTGTTCTAG GAGTTCCTCA GAAACAGAAA
  AGAAAATGGA GCAGGAGAGA AATGGGTTTC CAGGAGATTT CTTGGCTCCC AATCTTAGTC
  TATTCCCCAG CTTCCCTCTT GAACAGCTGT CCAGTCAGAG TCCCTAACCC AGAGGATCTA
  TGAAGTCCTT CCTCTGCAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51818986	NES14536930	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36682899					SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51818986	NES14536930	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:43483992 () rs orientation: forward

Symbol	Name	Function Class
Rr404824	regulatory region 404824	1837 bp downstream
Rr516192	regulatory region 516192	507 bp proximal
Tigit	T cell immunoreceptor with Ig and ITIM domains	within coordinates
Tssr138525	transcription start site region 138525	901 bp upstream
Tssr141140	transcription start site region 141140	398 bp upstream
Tssr141141	transcription start site region 141141	475 bp downstream
Tssr141142	transcription start site region 141142	503 bp downstream
Tssr141143	transcription start site region 141143	516 bp downstream
Tssr141144	transcription start site region 141144	731 bp downstream
Tssr141145	transcription start site region 141145	1370 bp downstream