rs36682909 SNP Detail

Summary

• ID
  rs36682909
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:131914570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGGGCCAC ACCTAAAGGG
  AACGCATAAA TACTGTACAG AGCTACTGCA TATGACAGAG AGGAGGCTCC CCTTTCCCTG
  GCATCCTAGC AAATTCTGTA AAGGACAGAA ATTGCTTCCC ACTTGTCAAC CCTGAGACAG
  ACAGACACAC ACATACACAA CCACTTATGA TCTGCACAGC CTTCTCCTTC TAGGTCCAGG
  Y
  CTGTCCCCAC TCCAGTTCCG TCATCCTTCC TTGCACATAT AAATAACCAA AATCATGGTG
  GGGGTTCCAT TGCCCTTCCC CGGACCACTG AAAGAGGCAA AAGGATAGAA ACATCTGTGG
  GACTTGCCTA GCGCAGGGCT AGCTGTGAAT GTATAGGGAC GCAGCTAATG ACAGCTATTA
  TCAAAAACAG CCTTGCTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51931028	NES14953372	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs36682909					SNP	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51931028	NES14953372	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:131914570 () rs orientation: forward

Symbol	Name	Function Class
Chst15	carbohydrate sulfotransferase 15	within coordinates
Gm44891	predicted gene 44891	within coordinates
Gm71837	predicted gene, 71837	within coordinates
Rr656553	regulatory region 656553	7 bp distal
Tssr75193	transcription start site region 75193	1215 bp upstream