rs36683977 SNP Detail

Summary

• ID
  rs36683977
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11311676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTTTAAC ACACTGTAGC
  AAATATAATT ATTGTTAGTC TATGTTCGTA GAACTTGCAG GTACTTGAGC TATGTCTTCT
  GGGCTGCAGA TCTTGCAATA TTTCCTTCTA TGTGACATTA ATTCTCATTT GCCTTTTCTT
  TCTTCCTAAT AATATTAACA GCTCCACTCA AGAAACAAAC AGTCCCTCAC CAGATCAACA
  K
  TACCAAATGA ACCCCGGATT CTTGTTACCA GTGGGGCAGA TGGGGATGGC ACTGCATTGG
  AAGCCAAATG TTGGTTGTAT CTGAAGCATT AGCTATCATT CATGAGTTCA AAGTCTGCCC
  CTAGGAGTGG CTATGATCCC GGGGAAGTGT GGTAAAGGTG TCTCTTTCCA GAACTGCCCC
  AATATGGAGA AACCTGGATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50596342	NES13638302	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36683977					SNP	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50596342	NES13638302	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11311676 () rs orientation: forward

Symbol	Name	Function Class
Ms4a7	membrane-spanning 4-domains, subfamily A, member 7	within coordinates
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Rr544316	regulatory region 544316	1794 bp proximal
Tssr155159	transcription start site region 155159	1072 bp downstream
Tssr158335	transcription start site region 158335	62 bp downstream
Tssr158336	transcription start site region 158336	1740 bp downstream
Tssr158337	transcription start site region 158337	1762 bp downstream
Tssr158338	transcription start site region 158338	1795 bp downstream