rs36684777 SNP Detail

Summary

• ID
  rs36684777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162534898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAACTAAT ATACTAGAGC
  AAGTCTATCA ATTTGCCAAT CACAAATAAC TATACAACAT AATCACTAAA ATACATCCCC
  ATAAAAGAAA CACTAGCCAT CTGGCTATCG ATGAGAGTTT ACACCACTGC CCATTATAAA
  CTATCACTTT GCTTTAAAGT GTGGTTTACA TAGTTTCTCT AAGGATTGAA AGTATCATTT
  Y
  TCATCACTAC TAGATTCTTA TCAGCCCATT GGCTAGACTA TAAAAAAAAA AAAAGGCAAA
  TTCCTGTTTT TACTAATTTG CCCTCGTTGA TTTAAAATTA TTATACAAGA AAAAGAAAAA
  ATATGCACAA AGATAAAATG AAGCACATTT ATGGCTTGGT ATTAAATCAG AATCTAATCC
  TTTAAAAATG TTAATGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51397222	NES14464339	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36684777					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51397222	NES14464339	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162534898 () rs orientation: forward

Symbol	Name	Function Class
Prrc2c	proline-rich coiled-coil 2C	within coordinates
Tssr14640	transcription start site region 14640	1765 bp upstream
Tssr14641	transcription start site region 14641	1184 bp upstream
Tssr14642	transcription start site region 14642	1138 bp upstream
Tssr14643	transcription start site region 14643	499 bp downstream