rs36684846 SNP Detail

Summary

• ID
  rs36684846
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149147319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAACACCTA TGACATAAAA
  ACAGTTAACT GTGCTGAGTG GCACACAGTC AGCATATTTA AATATTCCCT ATCATGCTAT
  CTGTCATCTA CTCCTGCTTT GTAAATGGGT TGGTGATATT TTGTCTGGGG AAATTTCCAT
  ACAGATGTTC CTAGTGAATA GAACGGCAGA AGAAAGGGCT ATTTCAGACT GCATTTGAAG
  R
  ATGGTTCCAC AAGACGGTAG AATATACTTT TCTTATGTGA ACTGTTGTTT GGCTCAACAT
  GTTAATTGTT ATCAGAACTT CTCTGGAGTT ACTAGGAATG GTAGTTAGAT AAAGCCCCGG
  GTTAATTTCC ATCAATACCA AGCTCCTTAC ACCGTTGATA TTTCAAACAT ATAAAAAGCT
  GTCAATCTTG GTCAGACAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51052170	NES13893070	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G	G	G	G	G		G	G	A		G
ss136071416	ENSMUSSNP542662	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
ss321018987	CHEV_3_149104646	CHEVERUD	SCREENING_POP	f	SNP												G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36684846					SNP	A	A	G	G	G	A	G	G	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052170	NES13893070	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149147319 () rs orientation: forward

Symbol	Name	Function Class
A630039O03Rik	RIKEN cDNA A630039O03 gene	1672 bp upstream
Gm30382	predicted gene, 30382	within coordinates