rs3668522 SNP Detail

Summary

• ID
  rs3668522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77468319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGTTCAG GCTCTGGTGA
  AACAGTGGTT CCTTTGGTGG ATAGGAAAGG TTAATAACCA AGAAAGGTCT CATGTTGTCA
  TAGTCTATGA CTCAGAAGGC AGTGACCACC CCTCCCTTCC ACCAAAGCCC CATTCTACTT
  TCACGTCTTT GTTTTTTCTT TGTGGCCCAC TAAGTTAAAA CAGGGTCACT CTCATGAGCA
  Y
  GCATGTGCAG CTATCCACTG GAGCAGGAGT AACTCACCAG TGACTACATT GTCATGACTA
  AAGACAATGA CTTCCTCAAC CCCCAGCAGC TCTTGTCTCC TATTGGCTCC CCTTGGGTAG
  GGCAAGGCCC CAAGAGCCCC TGTCTACACT CTTGTGATTT GGTGAGTGCT ATCCTGACAG
  AGAATCTTTT GTTTTGTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5044479	WI_WGS_9_78265391	WI	MOUSE	f	SNP	C			T
ss46318286	mCV22966853	ABI	CRAMUS_MOUSE	f	SNP		C	T	T	T
ss136659315	ENSMUSSNP2692332	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3668522					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77468319 () rs orientation: forward

Symbol	Name	Function Class
Gm69950	predicted gene, 69950	within coordinates
Rr212289	regulatory region 212289	544 bp proximal