rs3668529 SNP Detail

Summary

• ID
  rs3668529
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29477257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATCCTATGC TTTCTGAGCA CTTCCTTTTA CTCCCTTGCA
  TGATTAAAGC AATGCATTCT CTCTTTCTTC TCTGTCTCCC TGCCCCTTCA CTCCATCTCC
  Y
  TCCTCCTCCT CCTCTTTCTT CTCTTATCTT TTGCATTTTC TTTTGAAAGG TGGTTTCCCT
  GATATACCTA GCCTGGCCTT GAGCTCCCTA TGTAGCTAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J
ss5044486	WI_WGS_11_29526962	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J
rs3668529					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29477257 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2674	CpG island 2674	531 bp distal
Gm57396	predicted gene, 57396	873 bp upstream
Mtif2	mitochondrial translational initiation factor 2	within coordinates
Rr369145	regulatory region 369145	854 bp downstream
Rr444173	regulatory region 444173	884 bp distal
Rr444174	regulatory region 444174	790 bp distal
Rr444175	regulatory region 444175	112 bp distal
Rr444176	regulatory region 444176	1685 bp proximal
Tssr100719	transcription start site region 100719	837 bp downstream
Tssr100720	transcription start site region 100720	783 bp downstream
Tssr107213	transcription start site region 107213	878 bp upstream