rs36685853 SNP Detail

Summary

• ID
  rs36685853
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:128847455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAACAGC ATTTTTTTTT
  GATGTTTCAA AAACTTACAT AATAAAATCC ATCTTCATCG ATTTCACCAA AAACAGTAAT
  AATGTCTCCT GTGCAAAATG GAAGTTCAGC CTGCAAAGAC AGAAGACAGA GCCAAGAGCA
  GATTGCAACA GAAGACCGAG CTAAGAGCAG ATTGCAACAA GGTAGGTATT GTATAAGGTC
  Y
  AGCATCCTTC CTACCCTTTG GGAATGCACC TGTCTTTTGA CTGTGTCAAG GTGCAGGGCT
  GGCTGTAGGA TGCAGACCCA AGGTACCAGG TGCCCAGGTT GCTCAAAAGC TGAAGGGTAG
  GGATGGGGGT GGGGGTTTGT TTAAAGCAGT GGGACTGGGG GTGTGGGCAG GGTCTGTTCT
  GAGTAAGCCT GAGAGAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51843321	NES14704385	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36685853					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51843321	NES14704385	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:128847455 () rs orientation: forward

Symbol	Name	Function Class
Gm42875	predicted gene 42875	within coordinates
Rimbp2	RIMS binding protein 2	within coordinates