rs36686192 SNP Detail

Summary

• ID
  rs36686192
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:81120649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTTCTGC CGTGTTGGTT
  CCTTTGACCC ATAAATCCCA TTATTTCTGA AATTTCCTAG TGAAAAATAC TAAGCTGGGG
  AATAGGTTGG CACAGCCAGT CTTCTAGAGT GGTCTACATT GCTCTTGGTA CCTTATCCCC
  AGCATGGGGG GGCTAGGCGC TCTGCCATGT GGGCAGAGAG CAGGAAACCG CTTCTTCTAC
  K
  CTCTGTAGCA CTGTTTGCAC AGCCAGGCTA CAGAGATTCT AGGGATTTTG CTCTTACTCG
  AGCATTGATT GGTTTCCCCT GGACAGTAAT TCCCATACCT GACAGATCCT CAGATTTAAT
  ACAAGACCTT GAGAAACTTG GTTCTAGCCT TCCAAATTCT CTTTCCCTAA GTTTGGAGAA
  AGGCTAGATT TTGAGAACTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51970018	NES14987262	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36686192					SNP	T	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51970018	NES14987262	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:81120649 () rs orientation: forward

Symbol	Name	Function Class
Gm30605	predicted gene, 30605	within coordinates
Tssr81894	transcription start site region 81894	1714 bp upstream
Tssr81895	transcription start site region 81895	1037 bp downstream
Tssr81896	transcription start site region 81896	1082 bp downstream
Tssr81897	transcription start site region 81897	1094 bp downstream
Tssr81898	transcription start site region 81898	1109 bp downstream
Tssr81899	transcription start site region 81899	1132 bp downstream
Tssr81900	transcription start site region 81900	1157 bp downstream
Tssr81901	transcription start site region 81901	1180 bp downstream
Tssr81902	transcription start site region 81902	1194 bp downstream
Tssr81903	transcription start site region 81903	1217 bp downstream