rs36686978 SNP Detail

Summary

• ID
  rs36686978
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:65517412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATGTGGTGA TAGTTACCTC TTTGGTAACT
  ATCAAACCTT AGAGTGAATT ATATAATATG CAAATATATC ATAACAAAGC ACATACTAAA
  AATAGAGAAA GGAGACAAAT GCTTGGGCAG CACCTATTGT TTGCATCTAA GCTCTGCCGT
  R
  ATAAAAAACT GGAAGCAGTA TAAGCATCtg tcttagtcag ggtttgtatt cctgcacaaa
  catcaggacc aagaagcaag ttggggagga aagggtttat tcagcttaca cttccacatt
  gctgttcatc accaaagaaa gtcaggactg                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50444036	NES13447114	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A		G	G	G	G		G
ss325657191	CHEV_18_65543995	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36686978					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50444036	NES13447114	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65517412 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpk2	alpha-kinase 2			Intron
				Noncoding-Transcript-Variant
D18Mit182	DNA segment, Chr 18, Massachusetts Institute of Technology 182			865 bp proximal
Rr539523	regulatory region 539523			1268 bp distal
Tssr151599	transcription start site region 151599			1629 bp downstream
Tssr151600	transcription start site region 151600			1684 bp upstream
Tssr151601	transcription start site region 151601			1714 bp upstream
Tssr153698	transcription start site region 153698			1810 bp upstream