rs36687182 SNP Detail

Summary

• ID
  rs36687182
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:9962291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATTAAAGA ACTGGGTGAC CACGTGACCA ACTTACGCAA
  GATGGGTGCC CCTGAAGCTG GCATGGCAGA ATATCTCTTT GACAAGCACA CCCTGGGACA
  Y
  GGTGATGAGA GCTAAGCTGA CTTCCCCAAA GCCACGTGAC TTTACTGGTC ACTGAGGCAG
  TGCATGCATG TCAGGCTGCC TTCATCTTTT CTATAAGTTG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50605196	NES13645675	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36687182					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605196	NES13645675	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9962291 () rs orientation: forward

Symbol	Name	Function Class
Best1	bestrophin 1	247 bp downstream
Cpgi10595	CpG island 10595	1542 bp distal
Fth1	ferritin heavy polypeptide 1	within coordinates
Rr543966	regulatory region 543966	925 bp distal
Rr543967	regulatory region 543967	345 bp distal
Tssr155005	transcription start site region 155005	1809 bp downstream
Tssr155006	transcription start site region 155006	708 bp downstream
Tssr155007	transcription start site region 155007	635 bp downstream
Tssr155008	transcription start site region 155008	344 bp downstream
Tssr155009	transcription start site region 155009	within coordinates
Tssr155010	transcription start site region 155010	166 bp upstream
Tssr158136	transcription start site region 158136	1987 bp upstream
Tssr158137	transcription start site region 158137	690 bp upstream
Tssr158138	transcription start site region 158138	601 bp upstream
Tssr158139	transcription start site region 158139	308 bp upstream
Tssr158140	transcription start site region 158140	87 bp upstream
Tssr158141	transcription start site region 158141	59 bp upstream
Tssr158142	transcription start site region 158142	34 bp upstream
Tssr158143	transcription start site region 158143	5 bp downstream
Tssr158144	transcription start site region 158144	162 bp downstream