rs3668730 SNP Detail

Summary

• ID
  rs3668730
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:67470741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGT GACGTGCTCA GGTCCCCTTC
  W
  ATGGAGACTC AAGCAGTCTC TGAAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5044688	WI_WGS_14_58368288	WI	MOUSE	f	SNP				T	A
ss39152607	mCV25264757	ABI	CRAMUS_MOUSE	f	SNP	T	T	T		A	T
ss139643657	ENSMUSSNP1251482	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T			T
ss324659624	CHEV_14_67852129	CHEVERUD	SCREENING_POP	f	SNP							T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3668730					SNP	T	T	T	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:67470741 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6657	CpG island 6657	1037 bp distal
Cpgi6658	CpG island 6658	within coordinates
Cpgi6659	CpG island 6659	889 bp proximal
Cpgi6660	CpG island 6660	1608 bp proximal
Ebf2	early B cell factor 2	within coordinates
Gm20675	predicted gene 20675	163 bp upstream
Rr297418	regulatory region 297418	within coordinates
Tssr126327	transcription start site region 126327	84 bp downstream
Tssr126328	transcription start site region 126328	within coordinates
Tssr126329	transcription start site region 126329	143 bp upstream
Tssr126330	transcription start site region 126330	610 bp upstream
Tssr126331	transcription start site region 126331	1296 bp upstream
Tssr126332	transcription start site region 126332	1328 bp upstream
Tssr126333	transcription start site region 126333	1439 bp upstream
Tssr126334	transcription start site region 126334	1503 bp upstream
Tssr126335	transcription start site region 126335	1553 bp upstream