rs36687357 SNP Detail

Summary

• ID
  rs36687357
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98153579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAAAATTAA TATTAAGACC ATGTCTGAAT CACTAGGACA
  TTTAAAGACT CTTTTTCTTC TTTTGCCCTC TTCTCAAAAA TTGCACTGAG GATTTGACAG
  Y
  GTCCCTGATG GGCATTCTTG TGTAACTCTG ATTTCCCTCT TCTTGTCTCT ACTCTTTTCC
  TTTTTTTTTT TTTTAAACTT TAATGCTCAC TCACTGACC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51761490	NES14553604	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	C	C	T	C	T	C		C	C	C		T
ss148453767	ENSMUSSNP6560560	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss325078967	CHEV_15_98086129	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs36687357					SNP	C	C	T	T	C	C	T	C	T	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51761490	NES14553604	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98153579 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7649	CpG island 7649	1065 bp proximal
Gm62000	predicted gene, 62000	302 bp upstream
H1f7	H1.7 linker histone	288 bp downstream
Rr311340	regulatory region 311340	320 bp proximal
Rr391174	regulatory region 391174	1766 bp upstream
Tssr136230	transcription start site region 136230	1598 bp downstream
Tssr136231	transcription start site region 136231	1711 bp downstream