rs3668777 SNP Detail

Summary

• ID
  rs3668777
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:70109240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGA AGGTAGTGAC TACAGGTTGT
  W
  TAAGTGTTTT AAGGAAAGCC ACGTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	LG/J	SM/J
ss5044735	WI_WGS_16_70820703	WI	MOUSE	f	SNP				A	T
ss6362036	mCV23187979_67560351	CRAMUS	CRAMUS_MOUSE	f	SNP	A	A	A		T
ss39442392	mCV23187979	ABI	CRAMUS_MOUSE	f	SNP	A	A	A		T
ss148299035	ENSMUSSNP691161	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss325235726	CHEV_16_70312597	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	LG/J	SM/J
rs3668777					SNP	A	A	A	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:70109240 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8364	CpG island 8364	1484 bp proximal
Gbe1	1,4-alpha-glucan branching enzyme 1	1597 bp upstream
Rr517848	regulatory region 517848	1107 bp proximal
Tssr138939	transcription start site region 138939	1615 bp upstream
Tssr138940	transcription start site region 138940	1646 bp upstream
Tssr138941	transcription start site region 138941	1659 bp upstream
Tssr138942	transcription start site region 138942	1705 bp upstream
Tssr138943	transcription start site region 138943	1739 bp upstream
Tssr138944	transcription start site region 138944	1767 bp upstream