rs36688456 SNP Detail

Summary

• ID
  rs36688456
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130287436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGCCATG CCTTCATCTA
  AATTAAGCCA ACAGATCCTA GCACTGACTT TGTGGTTGAA GGACTGCTTA ATTTCGTAAC
  TGTCACATTT ACATTTTCTA AGTAAATATC CCCCTTCATC TCACTAAATA CTGTATTCTG
  CCCGCCTCTC AGATTGCACC CTGACAACTG CTGGTGACCT CCCTGTTCCC TCTTCAGGTG
  Y
  GCACCAGGTG CTTGCCATTA GCCTTGGCCT CCCCGAGTTT GTAAACCAGA TTTTGTGCGG
  GTCAGTTGAC CACGTTTCCT AAGAGCAAAA TATAGCACGC TTCTCTGCAG CGCCTTCCTT
  GCAAAACTGC TTCTCAGGGG TTTACAGATG GAGGCGCCCT GGAATGTGTC TGTTTTCTTG
  GGAACTGTAT TGCATTCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51628856	NES14661421	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36688456					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51628856	NES14661421	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130287436 () rs orientation: forward

Symbol	Name	Function Class
Col25a1	collagen, type XXV, alpha 1	Intron
Rr585170	regulatory region 585170	975 bp proximal
Rr585171	regulatory region 585171	1125 bp proximal
Rr585172	regulatory region 585172	1329 bp proximal