rs36688595 SNP Detail

Summary

• ID
  rs36688595
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:73965843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCTCTAGGG CCAGCAAGAG GCAGGGACAG
  GGAGAGGCCA AGACGAACAC CCTGGAGACA AACTAGACTG ATGACGGGGA GCTGCGGCAG
  GCTGCACCAC GCTGCACAGC GGCAAAGGAT GGTGATGAGA GTAGGGGTCC TATGGTGGAG
  S
  TCTAGAGCTT CCGGAAGGAG CAGCCCGGTA CAGAGACAGA ATGAGGAAGA AGCCAGGGAA
  TGAGAGAACC TGACTCCTAC CACCTCTCCA TCCCTGGCAC AGGTGGCCTC CACCTTGTGG
  GGAGGAAGGA AGGCGGACTG AACGTGTAGG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss51276680	NES14517871	PERLEGEN	MM_PANEL2	f	SNP	C	C	C		C	G		C
ss319792976	CHEV_1_73973258	CHEVERUD	SCREENING_POP	f	SNP				G			C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs36688595					SNP	C	C	C	G	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51276680	NES14517871	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:73965843 () rs orientation: forward

Symbol	Name	Function Class
Tns1	tensin 1	within coordinates
Tssr117	transcription start site region 117	1811 bp downstream
Tssr12216	transcription start site region 12216	1820 bp downstream