rs36688741 SNP Detail

Summary

• ID
  rs36688741
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136097389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGCTTATT CTAGAACACA
  GCCTATCATC CAACAGCCAT TTGGTGTTTA TTGAAAGGAA CTGAGTTTGG AATGACGCCT
  ATCTCGATTC CATCTAAAAC AGAATTCTCG GTTACCACTA TCGCGTTGAT AGCGATCTTG
  CCATCTCTGA GAGTATTCAC GTGTAGATTC AGTGGGTAAG ATACAAAGGG TGTAAGGGAC
  M
  GGCCGGTGTG TCAGAGGAAA GAAGGGACTA GATACTGTCT GACACTCAGG ATGTCACCCC
  TTCATCCTCT GTAGGATGCA GTGAGGTGGC AGAGAATATG GGAGCTGTAG CCAGTTGTGG
  TTATCAGGTG AGTGAGCGCT GAGAAATACG CATAGCAAAA GGTAGGAATC CGCTGATGAA
  AGACTATGGA GAGGGAAGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51445981	NES13995147	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	C	A	C	C	C	C	C	A	C	C	C	A
ss133829345	ENSMUSSNP7014085	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36688741					SNP	A	C	C	C	A	C	C	C	C	C	A	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51445981	NES13995147	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136097389 () rs orientation: forward

Symbol	Name	Function Class
Grin2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	within coordinates
Tssr2039	transcription start site region 2039	58 bp downstream