rs36688864 SNP Detail

Summary

• ID
  rs36688864
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69621771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAAAGCG TGAGGAGGGG
  GCGAAAAGAA GCACAAGAAG ACGCACCGCC ATTCTGTCCT GCACTTAAAT AATAATGTGG
  AATCAAAACC AACCCGGTGT CACCAACTAT AATCCACAGA CTGTTAGAAA TGGGAGAAGA
  GTTAGGCAAC CAGAGGGAGA AGGTGGAAGA GGCTCAAGTC ACTGGTGAGG AGGCCTGCAA
  Y
  TTGCCTCTGA ATTGTAGAAT CCCTCCCCCA GCCTTCAGTT AACAGCGATT CTGGTTCCTA
  GAGTTGTTCC ACAGGTTTTG AGGTTCAGCC CCTCATTCTG GGCAGGACAG GCCACTCTAA
  CCAGAGCACT TCTCTTCCCT TCTCTCGCCC TCCCTGCTGG GAGGTAGTAG ACACGGGTTT
  CTTTATGGTG GTGATTCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51017751	NES14400712	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36688864					SNP	T	T	T	T	C	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51017751	NES14400712	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69621771 () rs orientation: forward

Symbol	Name	Function Class
Rr257073	regulatory region 257073	1571 bp distal
Rr257074	regulatory region 257074	within coordinates
Rr403327	regulatory region 403327	152 bp downstream