rs36688933 SNP Detail

Summary

• ID
  rs36688933
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:38305365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGGAGGG ATGTGGCTCA
  GTGGTGGAGC ACTATGGTGG AGCACTGTGC CATACAGGGC AGAGTCAAAG AGCACTGGGT
  GAGTCTGCGG AGAGAAGAGA GGAAGTGTTC CATGTCACCG TCACACATAA CATGGTATGG
  AGATGGGAAG TCTGGACCTA AGTGTGCTGT CTGGGAAACA GGAAAGGGTG CTGGTGGCCG
  M
  TGACACATTT TGCTCTTTGT CCTCAGGCAG GTCTGGCCAG AGTAACTGCA AAGGTCACAG
  AGGAGTGGAG CAAATGGTGT CTCAGCCTCC TCCCTTGGAG GTGTTTGAGA TGCCATTTTC
  TCTCTGCCCT TGCTTGATGG CTCCTCCTAG GGCCTGCTCT GGTCTCATTG GTCCAGGTGA
  CATGAACATG GGAGGCTTCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51097443	NES14354899	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36688933					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51097443	NES14354899	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38305365 () rs orientation: forward

Symbol	Name	Function Class
Rr271625	regulatory region 271625	636 bp proximal
Rr275879	regulatory region 275879	1365 bp distal
Rr275880	regulatory region 275880	1836 bp proximal
Rr279089	regulatory region 279089	within coordinates
Rr279090	regulatory region 279090	339 bp proximal
Rr279091	regulatory region 279091	1018 bp proximal
Rr388287	regulatory region 388287	1774 bp upstream