rs3668910 SNP Detail

Summary

• ID
  rs3668910
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:47258521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAATGCTTCT TCGCCCCGCT CTGCCTCTAC TCAAATGAGG
  CTTCTTACCA CCCTCCTTGG GTCAGAATCA GTCCCCAAAA CCGAGAGAGC TGCGGGCTCC
  Y
  GTTCTAACTT TCAGTTCAGT TTTCTCATTT TTAAACTACT TTCTCCAACA GCAACAACTT
  TCACGGCAAA GAAAAGCACT CCCACAAGAA CCCTTATGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5044868	WI_WGS_13_46745732	WI	MOUSE	f	SNP	T		C
ss39127650	mCV25274247	ABI	CRAMUS_MOUSE	f	SNP		T	C	T
ss148985266	ENSMUSSNP2094370	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss324335497	CHEV_13_47200413	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3668910					SNP	T	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47258521 () rs orientation: forward

Symbol	Name	Function Class
1700026N04Rik	RIKEN cDNA 1700026N04 gene	1301 bp upstream
Cpgi5551	CpG island 5551	273 bp proximal
Dek	DEK proto-oncogene	within coordinates
Rr479039	regulatory region 479039	1135 bp proximal
Rr479040	regulatory region 479040	1392 bp proximal
Tssr119626	transcription start site region 119626	527 bp upstream
Tssr119627	transcription start site region 119627	1356 bp upstream
Tssr119628	transcription start site region 119628	1368 bp upstream
Tssr122369	transcription start site region 122369	329 bp downstream
Tssr122370	transcription start site region 122370	476 bp downstream
Tssr122371	transcription start site region 122371	563 bp downstream
Tssr122372	transcription start site region 122372	639 bp downstream
Tssr122373	transcription start site region 122373	688 bp downstream
Tssr122374	transcription start site region 122374	745 bp downstream
Tssr122375	transcription start site region 122375	1056 bp downstream
Tssr122376	transcription start site region 122376	1074 bp downstream
Tssr122377	transcription start site region 122377	1099 bp downstream
Tssr122378	transcription start site region 122378	1131 bp downstream
Tssr122379	transcription start site region 122379	1164 bp downstream
Tssr122380	transcription start site region 122380	1177 bp downstream