rs36689165 SNP Detail

Summary

• ID
  rs36689165
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:64976643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGTTGTC GGTCCTTTAT
  CTTTAAAATA AAATTAAAAA ATCCTACCCA AAGCAATCGC ATTATTTGGT ATTTTTTGTC
  ATGGTTTAAA AAAACCATTT ACTTTTACTG AAATATAAAC AGTGTTAAAG TCTGTGCACA
  TGATTGAAAG ATCTTAGGAC AAAGATTGAA AACTAGGGAG GGTTCCTTCT GATACGGGCA
  R
  TCAGAAAGAA AACAAATTGA AGGAAAAAAA CAAAAAATAC TTTTTAATCT TTCTCTAAAT
  TCCCTTTTTT CTCTTCTTTT TCTTCTGGTG AACCTTGTCA GCCAGCAGAC TCCTTGTCCT
  TTGAGAAGTA CTTAAAATCA GTCATTTCCC TGCTCTGTCC CAACAGAACC CTTGGTGGTT
  TTCCTGGGCC AGGTGGACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51142172	NES13844323	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36689165					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51142172	NES13844323	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:64976643 () rs orientation: forward

Symbol	Name	Function Class
Gm31684	predicted gene, 31684	within coordinates
Klf3	Kruppel-like transcription factor 3 (basic)	within coordinates
Rr612114	regulatory region 612114	1830 bp distal
Rr612115	regulatory region 612115	65 bp proximal
Tssr46420	transcription start site region 46420	1655 bp upstream